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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
1
whole genome sequencing assay
Assay category
10
DNA methylation
1
DNA sequencing
Date released
9
July, 2019
1
August, 2017
1
August, 2021
Available data
310
fastq
229
bam
179
bigWig
153
zippedFastqFolder
84
bed narrowPeak
41
tsv
38
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
14
bed bed3+
13
bedpe bed3+
11
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bedgraph
5
bed bed3
4
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
11
Homo sapiens
Biosample type
10
primary cell
tissue
1
cell line
Organ
6
epithelium
3
kidney
2
liver
1
brain
1
connective tissue
1
eye
1
heart
1
musculature of body
1
vasculature
Project
11
AMP
Genome assembly (visualization)
10
hg19
GRCh38
Lab
10
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
11 results
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RRBS
whole genome sequencing assay
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
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