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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
3
Hi-C
2
DNase-seq
1
MPRA
1
RRBS
Assay category
33
DNA binding
3
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
20
control
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
121
May, 2021
110
February, 2023
103
May, 2020
101
November, 2017
56
September, 2020
54
February, 2021
49
August, 2021
36
August, 2017
26
October, 2019
17
March, 2020
13
July, 2019
8
February, 2018
8
January, 2021
8
June, 2019
6
January, 2018
6
November, 2020
5
December, 2017
5
November, 2018
4
March, 2023
4
October, 2022
3
January, 2019
3
November, 2019
2
December, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
September, 2018
Available data
21
bam
21
fastq
15
tagAlign
4
bigWig
3
bed narrowPeak
3
bedpe bed3+
3
bigBed narrowPeak
3
cool
3
hic
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
39
Homo sapiens
Biosample type
tissue
20
primary cell
19
in vitro differentiated cells
1
cell line
Organ
19
connective tissue
15
epithelium
15
pancreas
Project
37
AMP
3
HPAP
Genome assembly (visualization)
99
hg19
GRCh38
Lab
37
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
Hi-C
DNase-seq
MPRA
RRBS
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
2
2
1
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
19
cell line
MIN6
1
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