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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
24
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
24
DNA accessibility
Date released
134
May, 2022
121
May, 2021
110
February, 2023
103
May, 2020
101
November, 2017
56
September, 2020
54
February, 2021
49
August, 2021
36
August, 2017
17
October, 2019
16
March, 2020
13
July, 2019
8
February, 2018
8
January, 2021
8
June, 2019
6
January, 2018
6
November, 2020
5
December, 2017
5
November, 2018
4
March, 2023
4
October, 2022
3
January, 2019
3
November, 2019
2
December, 2019
1
August, 2018
1
December, 2018
May, 2019
1
September, 2018
Available data
76
fastq
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
109
Homo sapiens
Biosample type
88
primary cell
tissue
16
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
Project
76
HPAP
29
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
76
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
assembly!
GRCh38
biosample_type!
tissue
month_released!
May, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
110 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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