Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 783histone modifications
  • 775binding sites
  • 734candidate regulatory elements
  • 564gene expression
  • 554target gene predictions
  • 482differential activity
  • 413accessible chromatin
  • 92variant allelic effects
  • 55chromatin state
  • 20eQTL
  • 17caQTL
  • 5hQTL
  • 5sQTL
  • 3meQTL
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 1946February, 2021
  • 755September, 2022
  • 320May, 2026
  • 286September, 2023
  • 261May, 2021
  • 226June, 2020
  • 153February, 2024
  • 99October, 2022
  • 94May, 2020
  • 64March, 2023
  • 56August, 2021
  • 56January, 2021
  • 41May, 2022
  • 27November, 2022
  • 24March, 2020
  • 21July, 2025
  • 19April, 2020
  • 16August, 2017
  • 16February, 2020
  • 9August, 2018
  • 2February, 2023
  • 2January, 2020
  • 2January, 2025
  • 2March, 2024
  • 2May, 2024
  • 1January, 2022
  • 1July, 2020
  • 1June, 2021
  • 1November, 2019
  • 1November, 2020
  • 1October, 2019
Available data
  • 3369bed bed3+
  • 700tsv
  • 135bigWig
  • 108txt
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 5bed bed9
  • 5bigBed bed9
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 4459Homo sapiens
Collection Tags
  • 1661ChIP-Atlas
  • 748EpiMap
  • 465ENCODE
  • 452DGA
  • 320pyxis
  • 281KPMP
  • 210T1D
  • 121BLUEPRINT
  • 105 T2DKP
  • 101AMP
  • 55HPAP
  • 46CMDGA
  • 17T2DKP
  • 12ROADMAP
  • 10T2D
  • 2GTEx
Biosample type
  • tissue
  • 2107primary cell
  • 1987cell line
  • 405in vitro differentiated cells
  • 4stem cell
Organ
  • 668epithelium
  • 341kidney
  • 322connective tissue
  • 161bodily fluid
  • 160pancreas
  • 153blood
  • 138heart
  • 138skin of body
  • 134vasculature
  • 111brain
  • 107embryo
  • 94lung
  • 93blood vessel
  • 83liver
  • 65mammary gland
  • 60__MARKER__
  • 59musculature of body
  • 56adipose tissue
  • 55bone element
  • 54lymph node
  • 52penis
  • 52prostate gland
  • 36artery
  • 35extraembryonic component
  • 32intestine
  • 30eye
  • 28large intestine
  • 17vein
  • 16lymphatic vessel
  • 14uterus
  • 12bronchus
  • 11bone marrow
  • 10pituitary gland
  • 9placenta
  • 7gonad
  • 7limb
  • 6mouth
  • 6spinal cord
  • 6testis
  • 5esophagus
  • 5trachea
  • 4lymphoid tissue
  • 3nose
  • 2stomach
  • 1adrenal gland
  • 1pericardium
  • 1thyroid gland
Project
  • 4135AMP
  • 281KPMP
  • 57T1D
  • 19LungMap
  • 13community
Genome assembly (visualization)
  • 4544hg19
  • GRCh38
  • 1hg18
assembly!
  • GRCh38
biosample_type!
  • tissue
BIOSAMPLE
TYPE

4505 results

search-icontable-tab-icon
Clear Filters
histone modifications
binding sites
candidate regulatory elements
gene expression
target gene predictions
differential activity
accessible chromatin
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
sQTL
meQTL
other
representative DNase hypersensitivity sites
primary cell
CD8-positive, alpha-beta T cell3073431
endothelial cell1291254222
B cell14210133
common myeloid progenitor, CD34-positive2714
natural killer cell1625183
cell line
A5491221191
EndoC_BH11181371
MCF-723961
breast cancer cell119
K562127711
in vitro differentiated cells
hematopoietic multipotent progenitor cell11191101
adipocyte1141644
neural progenitor cell2575
embryonic stem cell11165
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego