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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 288ChIP-seq
  • 195ATAC-seq
  • 115total RNA-seq
  • 89single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 32pCHi-C
  • 16Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 4DNase-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 288DNA binding
  • 256DNA accessibility
  • 208Transcription
  • 58DNA methylation
  • 163D chromatin structure
  • 1DNA sequencing
Target of assay
  • 147control
  • 79histone
  • 79histone modification
  • 65transcription factor
  • 48broad histone mark
  • 31narrow histone mark
  • 13RNA binding protein
  • 3nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 134May, 2022
  • 121May, 2021
  • 110February, 2023
  • 103May, 2020
  • 101November, 2017
  • 56September, 2020
  • 54February, 2021
  • 49August, 2021
  • 36August, 2017
  • 26October, 2019
  • 17March, 2020
  • 13July, 2019
  • 8February, 2018
  • 8January, 2021
  • 8June, 2019
  • 6January, 2018
  • 6November, 2020
  • 5December, 2017
  • 5November, 2018
  • 4March, 2023
  • 4October, 2022
  • 3January, 2019
  • 3November, 2019
  • 2December, 2019
  • 1August, 2018
  • 1December, 2018
  • 1May, 2019
  • 1September, 2018
Available data
  • 310fastq
  • 229bam
  • 179bigWig
  • 153zippedFastqFolder
  • 84bed narrowPeak
  • 41tsv
  • 38bigBed narrowPeak
  • 30tagAlign
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 14bed bed3+
  • 13bedpe bed3+
  • 11hic
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 7bed bedgraph
  • 5bed bed3
  • 4hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 880Homo sapiens
Biosample type
  • tissue
  • 552primary cell
  • 198cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 215epithelium
  • 192pancreas
  • 137liver
  • 51connective tissue
  • 17vasculature
  • 15blood
  • 15blood vessel
  • 15bodily fluid
  • 15kidney
  • 10vein
  • 8embryo
  • 7brain
  • 5heart
  • 3musculature of body
  • 2artery
  • 2eye
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
Project
  • 539AMP
  • 314HPAP
  • 29T1D
  • 4community
Genome assembly (visualization)
  • 1458hg19
  • GRCh38
  • 5hg18
Lab
  • 410AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 111Kyle Gaulton, UCSD
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
Audit category:
  • 70inconsistent ontology term
  • 33audit script error
Audit category:
  • 9missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

886 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
DNase-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 5 more
primary cell
Langerhans cell8548
pancreatic alpha cell62242311
pancreatic beta cell61311161
exocrine cell39
CD8-positive, alpha-beta T cell33221
cell line
HepG21179222
EndoC_BH1218162321
GM1287861
Panc17
EndoC-BH1
in vitro differentiated cells
embryonic stem cell38651
adipocyte19811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
pancreatic endoderm51
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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