Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
137
DNA binding
19
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
83
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
3
nucleotide modification
2
chromatin remodeller
recombinant protein
Date released
98
November, 2017
36
August, 2021
16
May, 2021
10
October, 2019
6
March, 2020
6
November, 2020
4
February, 2021
3
January, 2019
3
November, 2018
3
November, 2019
2
March, 2023
1
December, 2018
1
February, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
118
bam
105
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
188
Homo sapiens
Biosample type
866
tissue
493
primary cell
192
cell line
82
in vitro differentiated cells
7
stem cell
Organ
132
liver
37
pancreas
30
epithelium
7
blood
7
bodily fluid
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
190
AMP
2
community
Genome assembly (visualization)
445
hg19
GRCh38
Lab
150
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
35
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
192 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
116
9
2
2
2
1
EndoC_BH1
2
18
6
1
2
1
GM12878
6
1
Panc1
7
EndoC-BH1
1
1
+ See 11 more…
See all biosamples
Download