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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
16
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
11
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
16
May, 2021
7
October, 2019
6
November, 2020
3
November, 2019
2
August, 2021
March, 2020
1
February, 2023
Available data
9
bam
1
bedpe bed3+
1
hic
Organism
34
Homo sapiens
Biosample type
154
primary cell
113
tissue
35
cell line
1
in vitro differentiated cells
Organ
133
liver
35
pancreas
28
epithelium
7
blood
7
bodily fluid
5
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
35
AMP
Genome assembly (visualization)
53
hg19
GRCh38
Lab
29
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
assembly!
GRCh38
month_released!
March, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
16
2
6
2
1
1
Panc1
7
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