Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 138ChIP-seq
  • 19ATAC-seq
  • 9total RNA-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3Hi-C
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 138DNA binding
  • 19DNA accessibility
  • 11Transcription
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 83control
  • 52transcription factor
  • 7RNA binding protein
  • 6histone
  • 6histone modification
  • 3broad histone mark
  • 3narrow histone mark
  • 3nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 98November, 2017
  • 36August, 2021
  • 16May, 2021
  • 10October, 2019
  • 6February, 2023
  • 6March, 2020
  • 6November, 2020
  • 4February, 2021
  • 4November, 2018
  • 3January, 2019
  • 3November, 2019
  • 2March, 2023
  • 1December, 2018
  • 1January, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 119bam
  • 106fastq
  • 68bigWig
  • 46bed narrowPeak
  • 32bigBed narrowPeak
  • 15tsv
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 6tagAlign
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3+
  • 1txt
  • 1vcf
Organism
  • 194Homo sapiens
Biosample type
  • 918tissue
  • 552primary cell
  • 198cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 133liver
  • 37pancreas
  • 30epithelium
  • 7blood
  • 7bodily fluid
  • 7kidney
  • 2artery
  • 2blood vessel
  • 2heart
  • 2vasculature
  • 1mammary gland
Project
  • 191AMP
  • 5T1D
  • 2community
Genome assembly (visualization)
  • 530hg19
  • GRCh38
Lab
  • 151AMP-T2D consortium
  • 34Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 35inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

198 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG211792221
EndoC_BH1218631221
GM1287861
Panc17
EndoC-BH111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego