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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
22
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
22
DNA accessibility
11
Transcription
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
13
February, 2023
12
August, 2021
8
February, 2018
5
December, 2017
4
February, 2021
4
January, 2018
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2018
Available data
26
bam
23
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
hic
4
tsv
txt
2
bigBed narrowPeak
2
ibed
Organism
122
Homo sapiens
Biosample type
750
tissue
547
primary cell
195
cell line
122
in vitro differentiated cells
7
stem cell
Organ
43
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
122
AMP
Genome assembly (visualization)
290
hg19
GRCh38
4
hg18
Lab
71
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
hic
txt
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
5
1
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
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