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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
7
DNA accessibility
2
Transcription
Date released
4
February, 2021
3
February, 2023
2
December, 2019
2
March, 2020
Available data
26
bam
23
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
11
Homo sapiens
Biosample type
159
tissue
18
primary cell
15
cell line
11
in vitro differentiated cells
4
stem cell
Organ
4
connective tissue
Project
11
AMP
Genome assembly (visualization)
134
hg19
GRCh38
Lab
8
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
2
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
2
embryonic stem cell
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
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