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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
23
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
Assay category
46
DNA binding
23
DNA accessibility
11
Transcription
2
3D chromatin structure
Target of assay
34
histone
34
histone modification
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
42
May, 2021
16
February, 2023
12
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
October, 2019
2
December, 2019
1
August, 2018
1
December, 2017
Available data
14
bigWig
12
tagAlign
7
bed bedgraph
6
bed bed3+
6
fastq
5
bed bed3
5
bedpe bed3+
4
bed narrowPeak
4
tsv
3
txt
2
hic
2
ibed
1
bam
Organism
93
Homo sapiens
Biosample type
678
tissue
511
primary cell
114
cell line
93
in vitro differentiated cells
7
stem cell
Organ
34
connective tissue
2
embryo
1
adipose tissue
Project
93
AMP
Genome assembly (visualization)
284
hg19
GRCh38
4
hg18
Lab
44
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
April, 2019
October, 2019
organ_slims!
ureter
target.investigated_as!
control
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
32
6
5
1
adipocyte
12
6
1
1
cardiomyocytes (cardiac muscle cell)
2
1
2
chondrocyte
5
immature adipocyte
2
2
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