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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
ATAC-seq
5
total RNA-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
58
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
24
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
47
May, 2021
8
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
January, 2018
3
February, 2023
2
December, 2019
2
October, 2019
Available data
20
bam
17
fastq
12
bigWig
7
tagAlign
6
bedpe bed3+
4
hic
4
tsv
3
bed bedgraph
3
txt
2
bed narrowPeak
2
ibed
Organism
85
Homo sapiens
Biosample type
732
tissue
391
primary cell
161
cell line
85
in vitro differentiated cells
6
stem cell
Organ
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
pancreas
Project
85
AMP
Genome assembly (visualization)
222
hg19
GRCh38
4
hg18
Lab
47
Kyle Gaulton, UCSD
35
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
Hepatic endoderm
2
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