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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78ChIP-seq
  • 25ATAC-seq
  • 9total RNA-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
Assay category
  • 78DNA binding
  • 25DNA accessibility
  • 11Transcription
  • 43D chromatin structure
Target of assay
  • 34histone
  • 34histone modification
  • 32control
  • 19broad histone mark
  • 15narrow histone mark
  • 12transcription factor
  • 5RNA binding protein
Date released
  • 48May, 2021
  • 19August, 2017
  • 16February, 2023
  • 12August, 2021
  • 8February, 2018
  • 6March, 2020
  • 5December, 2017
  • 4February, 2021
  • 4January, 2018
  • 4October, 2019
  • 2December, 2019
  • 1August, 2018
Available data
  • 26bam
  • 23fastq
  • 22tagAlign
  • 16bigWig
  • 7bed bedgraph
  • 7bedpe bed3+
  • 6bed bed3+
  • 5bed bed3
  • 4bed narrowPeak
  • 4hic
  • 4tsv
  • 3txt
  • 2bigBed narrowPeak
  • 2ibed
Organism
  • 129Homo sapiens
Biosample type
  • 918tissue
  • 552primary cell
  • 198cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 43connective tissue
  • 8embryo
  • 4epithelium
  • 1adipose tissue
  • 1liver
  • 1pancreas
Project
  • 129AMP
Genome assembly (visualization)
  • 297hg19
  • GRCh38
  • 4hg18
Lab
  • 75AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 16inconsistent ontology term
  • 2audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

129 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell38651
adipocyte19811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
pancreatic endoderm51
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