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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
70
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
70
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
30
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
46
February, 2021
17
August, 2017
12
July, 2019
12
October, 2019
8
January, 2021
6
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
82
bam
34
bed narrowPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
549
Homo sapiens
Biosample type
873
tissue
549
primary cell
197
cell line
124
in vitro differentiated cells
7
stem cell
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
211
AMP
24
T1D
Genome assembly (visualization)
615
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
176
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
17
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed bed3
organ_slims!
musculature of body
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
549 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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