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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
12
ChIP-seq
4
RRBS
3
total RNA-seq
2
Hi-C
2
single cell RNA-seq
1
DNAme array
1
pCHi-C
Assay category
112
DNA accessibility
12
DNA binding
5
DNA methylation
5
Transcription
2
3D chromatin structure
Target of assay
8
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
102
May, 2020
12
February, 2023
6
June, 2019
6
May, 2021
5
July, 2019
2
August, 2017
1
February, 2021
1
November, 2017
1
November, 2018
1
September, 2018
Available data
57
bam
52
bigWig
12
tsv
7
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
bed narrowPeak
3
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
hdf5
1
tagAlign
Organism
137
Homo sapiens
Biosample type
618
tissue
137
primary cell
95
cell line
71
in vitro differentiated cells
5
stem cell
Organ
epithelium
14
vasculature
12
blood vessel
12
pancreas
9
vein
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
137
AMP
Genome assembly (visualization)
112
hg19
GRCh38
Lab
172
Klaus Kaestner, Upenn
137
AMP-T2D consortium
29
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
137 results
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ATAC-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
single cell RNA-seq
DNAme array
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
monocyte
2
1
1
1
cardiac fibroblast
2
1
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