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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
10
RRBS
5
Hi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
164
DNA accessibility
58
DNA methylation
32
DNA binding
5
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
22
May, 2021
13
August, 2017
9
July, 2019
9
October, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
458
Homo sapiens
Biosample type
857
tissue
458
primary cell
127
cell line
113
in vitro differentiated cells
6
stem cell
Organ
174
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
musculature of body
2
eye
2
liver
1
bone element
1
bone marrow
1
brain
Project
314
HPAP
120
AMP
24
T1D
Genome assembly (visualization)
32
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
120
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
31
audit script error
14
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bigWig
month_released!
January, 2019
BIOSAMPLE
ASSAY
458 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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