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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
22
ChIP-seq
9
RRBS
6
Hi-C
3
DNase-seq
3
total RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
116
DNA accessibility
22
DNA binding
10
DNA methylation
6
3D chromatin structure
3
Transcription
Target of assay
13
control
9
histone
9
histone modification
6
broad histone mark
3
narrow histone mark
Date released
102
May, 2020
13
July, 2019
12
February, 2023
12
October, 2019
8
June, 2019
6
May, 2021
1
August, 2017
1
August, 2021
February, 2021
1
March, 2020
1
May, 2019
Available data
83
bam
59
bigWig
fastq
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
bed bed3+
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
519
tissue
157
primary cell
48
in vitro differentiated cells
41
cell line
4
stem cell
Organ
25
epithelium
13
vasculature
12
blood vessel
10
vein
8
kidney
5
connective tissue
4
brain
3
heart
3
liver
3
musculature of body
2
eye
Project
157
AMP
Genome assembly (visualization)
181
hg19
GRCh38
Lab
157
AMP-T2D consortium
155
Klaus Kaestner, Upenn
59
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
1
audit script error
assembly!
GRCh38
files.file_type!
fastq
month_released!
February, 2021
BIOSAMPLE
ASSAY
157 results
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ATAC-seq
ChIP-seq
RRBS
Hi-C
DNase-seq
total RNA-seq
DNAme array
FAIRE-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
endothelial cell of umbilical vein
7
2
1
monocyte
2
1
1
1
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