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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
18
ChIP-seq
1
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
47
DNA accessibility
18
DNA binding
Target of assay
13
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
45
May, 2020
9
October, 2019
8
June, 2019
1
August, 2017
1
August, 2021
1
February, 2021
1
May, 2019
Available data
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
66
Homo sapiens
Biosample type
119
tissue
66
primary cell
15
cell line
8
in vitro differentiated cells
Organ
13
epithelium
8
blood vessel
8
vasculature
8
vein
4
connective tissue
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
66
AMP
Genome assembly (visualization)
349
hg19
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
7
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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