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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
35
ChIP-seq
2
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
48
DNA accessibility
35
DNA binding
Target of assay
29
control
5
histone
5
histone modification
4
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
45
May, 2020
16
August, 2017
9
October, 2019
8
June, 2019
3
November, 2017
1
August, 2021
1
February, 2021
1
May, 2019
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
84
Homo sapiens
Biosample type
175
tissue
119
cell line
84
primary cell
26
in vitro differentiated cells
Organ
27
epithelium
12
pancreas
10
vasculature
9
blood vessel
8
vein
4
connective tissue
3
brain
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
84
AMP
Genome assembly (visualization)
524
hg19
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assembly!
GRCh38
month_released!
July, 2018
October, 2018
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
7
1
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
2
2
B cell
2
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