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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
47
WGBS
39
ATAC-seq
26
ChIP-seq
7
Hi-C
6
RRBS
2
DNase-seq
1
FAIRE-seq
Assay category
53
DNA methylation
53
Transcription
42
DNA accessibility
26
DNA binding
7
3D chromatin structure
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
37
February, 2023
16
September, 2020
12
August, 2017
12
October, 2019
8
July, 2019
6
February, 2021
3
October, 2022
2
June, 2019
2
November, 2017
1
August, 2021
1
March, 2020
1
May, 2019
Available data
80
zippedFastqFolder
73
fastq
27
bam
7
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
tagAlign
1
tar
Organism
181
Homo sapiens
Biosample type
181
primary cell
30
cell line
15
tissue
4
in vitro differentiated cells
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
142
HPAP
39
AMP
Genome assembly (visualization)
227
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
4
audit script error
3
inconsistent ontology term
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
organ_slims!
blood
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
WGBS
ATAC-seq
ChIP-seq
Hi-C
RRBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
42
31
22
6
1
pancreatic beta cell
11
16
13
6
1
endothelial cell of umbilical vein
7
2
1
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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