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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
40
ChIP-seq
21
total RNA-seq
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
200
DNA accessibility
108
Transcription
58
DNA methylation
40
DNA binding
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
February, 2023
56
September, 2020
54
May, 2021
46
February, 2021
13
July, 2019
9
October, 2019
8
January, 2021
4
August, 2017
3
October, 2022
1
March, 2020
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
88
fastq
87
bigWig
55
bam
34
bed narrowPeak
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
tsv
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
1
tar
Organism
432
Homo sapiens
Biosample type
674
tissue
432
primary cell
109
cell line
81
in vitro differentiated cells
7
stem cell
Organ
123
epithelium
105
pancreas
11
vasculature
10
blood vessel
8
blood
8
bodily fluid
8
vein
5
kidney
4
brain
4
connective tissue
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
238
HPAP
170
AMP
24
T1D
Genome assembly (visualization)
618
hg19
GRCh38
Lab
238
Klaus Kaestner, Upenn
138
AMP-T2D consortium
56
Kyle Gaulton, UCSD
Audit category:
31
audit script error
7
inconsistent ontology term
assembly!
GRCh38
month_released!
February, 2023
target.investigated_as!
control
BIOSAMPLE
ASSAY
432 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
31
15
1
CD8-positive, alpha-beta T cell
2
30
2
1
pancreatic beta cell
13
16
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
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