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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 151ATAC-seq
  • 97total RNA-seq
  • 87single cell RNA-seq
  • 72ChIP-seq
  • 56snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 10RRBS
  • 9Hi-C
  • 4DNase-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 212DNA accessibility
  • 184Transcription
  • 72DNA binding
  • 58DNA methylation
  • 93D chromatin structure
Target of assay
  • 39histone
  • 39histone modification
  • 32control
  • 26broad histone mark
  • 13narrow histone mark
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 134May, 2022
  • 102May, 2020
  • 88February, 2023
  • 57May, 2021
  • 56September, 2020
  • 46February, 2021
  • 17August, 2017
  • 13July, 2019
  • 12October, 2019
  • 8January, 2021
  • 8June, 2019
  • 3November, 2017
  • 3October, 2022
  • 1August, 2021
  • 1March, 2020
  • 1May, 2019
  • 1November, 2018
  • 1September, 2018
Available data
  • 180fastq
  • 153zippedFastqFolder
  • 94bigWig
  • 84bam
  • 34bed narrowPeak
  • 18tsv
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 7bed bed3+
  • 5hic
  • 4bed broadPeak
  • 4bedpe bed3+
  • 4bigBed broadPeak
  • 4bigBed narrowPeak
  • 4hdf5
  • 3cool
  • 2csv
  • 2tagAlign
  • 1tar
Organism
  • 552Homo sapiens
Biosample type
  • 918tissue
  • 552primary cell
  • 198cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 181epithelium
  • 154pancreas
  • 15vasculature
  • 13blood vessel
  • 10vein
  • 8blood
  • 8bodily fluid
  • 8kidney
  • 7brain
  • 7connective tissue
  • 3heart
  • 3liver
  • 3musculature of body
  • 2eye
  • 1bone element
  • 1bone marrow
Project
  • 314HPAP
  • 214AMP
  • 24T1D
Genome assembly (visualization)
  • 628hg19
  • GRCh38
Lab
  • 314Klaus Kaestner, Upenn
  • 179AMP-T2D consortium
  • 59Kyle Gaulton, UCSD
Audit category:
  • 31audit script error
  • 18inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

552 results

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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell8548
pancreatic alpha cell22426311
pancreatic beta cell13116161
exocrine cell39
CD8-positive, alpha-beta T cell22331
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