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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
107
single cell RNA-seq
87
RNA microarray
34
total RNA-seq
24
pCHi-C
23
ATAC-seq
13
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
1
GRO-seq
Assay category
315
DNA binding
141
Transcription
30
DNA accessibility
22
DNA methylation
13
3D chromatin structure
Target of assay
182
control
132
histone
132
histone modification
71
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
99
August, 2021
93
February, 2021
60
October, 2019
35
March, 2020
31
May, 2020
29
October, 2018
25
November, 2017
24
February, 2020
23
May, 2019
16
April, 2019
16
July, 2019
12
December, 2017
11
February, 2023
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
September, 2017
3
December, 2019
3
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
November, 2019
Available data
179
bam
157
tsv
122
tagAlign
94
txt
73
fastq
41
bigWig
36
bed narrowPeak
21
bed broadPeak
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
Organism
634
Homo sapiens
Biosample type
631
tissue
177
primary cell
151
cell line
75
in vitro differentiated cells
5
stem cell
Organ
122
heart
92
bone element
83
liver
68
connective tissue
66
adipose tissue
62
brain
59
pancreas
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
kidney
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
634
AMP
2
T1D
Genome assembly (visualization)
GRCh38
1685
hg19
1
hg18
Lab
636
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
eye
BIOSAMPLE
ASSAY
636 results
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ChIP-seq
single cell RNA-seq
RNA microarray
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
snDrop-seq
snATAC-seq
DNase-seq
GRO-seq
tissue
bone element
84
liver
70
1
1
1
1
3
islet of Langerhans
44
6
14
1
1
1
1
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
1
2
+ See 80 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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