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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
single cell RNA-seq
143
ChIP-seq
129
total RNA-seq
87
RNA microarray
83
ATAC-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
303
Transcription
143
DNA binding
112
DNA accessibility
21
DNA methylation
16
3D chromatin structure
Target of assay
125
histone
125
histone modification
64
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
165
August, 2021
114
August, 2017
93
February, 2021
60
February, 2023
54
October, 2019
47
September, 2023
42
May, 2022
31
March, 2020
25
February, 2020
19
April, 2020
13
July, 2019
13
November, 2017
8
January, 2021
7
October, 2017
4
July, 2018
4
November, 2020
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
159
tsv
157
txt
122
tagAlign
100
bed narrowPeak
93
fastq
59
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
712
Homo sapiens
Biosample type
714
tissue
467
primary cell
103
in vitro differentiated cells
79
cell line
7
stem cell
Organ
126
kidney
106
heart
92
bone element
73
liver
73
pancreas
53
eye
48
connective tissue
47
adipose tissue
38
musculature of body
37
brain
20
lung
15
epithelium
11
blood vessel
11
vasculature
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
619
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
107
hg19
Lab
505
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bam
month_released!
November, 2018
BIOSAMPLE
ASSAY
714 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
49
6
1
1
islet of Langerhans
41
26
27
7
4
3
1
4
bone element
84
liver
1
23
20
20
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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