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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
174
single cell RNA-seq
134
total RNA-seq
101
ATAC-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
308
Transcription
292
DNA binding
134
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
109
histone
109
histone modification
60
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
106
August, 2017
93
February, 2021
77
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
30
March, 2020
29
October, 2018
25
February, 2020
24
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
204
bam
158
tsv
157
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
886
Homo sapiens
Biosample type
889
tissue
491
primary cell
168
cell line
81
in vitro differentiated cells
7
stem cell
Organ
134
kidney
123
liver
122
heart
111
pancreas
92
bone element
66
connective tissue
65
adipose tissue
61
brain
53
eye
28
blood vessel
28
vasculature
27
musculature of body
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
795
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1521
hg19
Lab
658
AMP-T2D consortium
67
Katalin Susztak, Upenn
50
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bed broadPeak
month_released!
May, 2021
organ_slims!
gonad
BIOSAMPLE
ASSAY
889 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
36
32
45
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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