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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
163
single cell RNA-seq
87
RNA microarray
66
ATAC-seq
66
total RNA-seq
24
pCHi-C
11
Hi-C
11
WGBS
11
snATAC-seq
3
snDrop-seq
2
FAIRE-seq
2
RRBS
1
DNase-seq
Assay category
278
DNA binding
229
Transcription
80
DNA accessibility
13
DNA methylation
11
3D chromatin structure
Target of assay
157
control
120
histone
120
histone modification
67
narrow histone mark
53
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
99
August, 2017
99
August, 2021
93
February, 2021
78
October, 2019
47
September, 2023
42
February, 2023
42
May, 2022
31
May, 2020
25
March, 2020
25
November, 2017
24
February, 2020
22
May, 2019
19
April, 2020
18
October, 2018
16
April, 2019
12
December, 2017
10
July, 2019
9
October, 2017
4
December, 2018
3
December, 2019
3
November, 2018
2
January, 2018
1
January, 2019
1
May, 2021
Available data
158
bam
155
tsv
112
tagAlign
94
txt
75
bed narrowPeak
54
fastq
50
bigWig
15
bed broadPeak
7
bed bedMethyl
7
bedpe bed3+
bigBed bedMethyl
7
hic
6
csv
5
bed bed3
4
bigBed narrowPeak
1
bed bed3+
Organism
723
Homo sapiens
Biosample type
725
tissue
388
primary cell
161
cell line
128
in vitro differentiated cells
7
stem cell
Organ
122
liver
121
heart
pancreas
92
bone element
67
connective tissue
66
adipose tissue
66
kidney
61
brain
53
eye
38
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
658
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
GRCh38
1334
hg19
Lab
618
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bigBed bedMethyl
lab.title!
Katalin Susztak, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
725 results
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Clear Filters
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
WGBS
snATAC-seq
snDrop-seq
FAIRE-seq
RRBS
DNase-seq
tissue
liver
70
1
20
20
1
1
3
bone element
84
kidney
7
53
1
islet of Langerhans
21
10
14
4
subcutaneous abdominal adipose tissue
36
3
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