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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
163
single cell RNA-seq
102
ATAC-seq
87
RNA microarray
86
total RNA-seq
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
249
Transcription
129
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
101
August, 2021
93
February, 2021
81
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
204
bam
159
tsv
122
tagAlign
101
bed narrowPeak
100
txt
97
fastq
60
bigWig
22
bed broadPeak
10
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
848
Homo sapiens
Biosample type
851
tissue
552
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
67
kidney
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
756
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1754
hg19
Lab
684
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
851 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
46
32
4
7
3
1
1
4
liver
70
1
20
20
1
1
1
3
bone element
84
kidney
7
53
1
1
subcutaneous abdominal adipose tissue
36
3
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