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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
86
RNA microarray
73
ATAC-seq
73
total RNA-seq
68
single cell RNA-seq
23
pCHi-C
14
Hi-C
12
snATAC-seq
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
313
DNA binding
141
Transcription
90
DNA accessibility
22
DNA methylation
14
3D chromatin structure
Target of assay
184
control
130
histone
130
histone modification
69
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
August, 2021
126
August, 2017
93
February, 2021
77
October, 2019
47
September, 2023
42
February, 2023
42
May, 2022
31
May, 2020
30
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
1
August, 2022
1
January, 2019
1
November, 2019
Available data
180
bam
122
tagAlign
94
txt
83
bed narrowPeak
73
fastq
60
bigWig
59
tsv
22
bed broadPeak
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
694
Homo sapiens
Biosample type
696
tissue
492
primary cell
157
cell line
70
in vitro differentiated cells
7
stem cell
Organ
123
liver
92
bone element
70
kidney
66
connective tissue
66
pancreas
65
adipose tissue
62
brain
53
eye
40
musculature of body
30
heart
26
limb
22
blood vessel
22
vasculature
20
lung
15
epithelium
12
nerve
9
artery
9
spleen
8
skeleton
5
gonad
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
628
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
GRCh38
1736
hg19
Lab
580
AMP-T2D consortium
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
organ_slims!
ovary
BIOSAMPLE
ASSAY
696 results
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Clear Filters
ChIP-seq
RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
snATAC-seq
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
liver
70
20
20
1
1
1
1
3
islet of Langerhans
42
17
20
4
2
1
1
1
4
bone element
84
kidney
7
56
1
1
subcutaneous abdominal adipose tissue
36
3
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