Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
ChIP-seq
174
single cell RNA-seq
122
total RNA-seq
87
RNA microarray
73
ATAC-seq
24
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
3
snDrop-seq
1
DNase-seq
Assay category
306
DNA binding
296
Transcription
96
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
171
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
93
February, 2021
70
October, 2019
47
September, 2023
42
February, 2023
42
May, 2022
31
March, 2020
31
May, 2020
29
October, 2018
25
November, 2017
24
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
1
August, 2022
1
January, 2019
1
November, 2019
Available data
169
bam
158
tsv
151
txt
122
tagAlign
83
bed narrowPeak
73
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
847
Homo sapiens
Biosample type
850
tissue
493
primary cell
187
cell line
82
in vitro differentiated cells
7
stem cell
Organ
134
kidney
123
liver
122
heart
92
bone element
67
connective tissue
66
adipose tissue
64
pancreas
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
782
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
GRCh38
1706
hg19
Lab
672
AMP-T2D consortium
67
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2020
organ_slims!
nerve
BIOSAMPLE
ASSAY
850 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
islet of Langerhans
46
21
17
4
1
3
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
+ See 81 more…
See all biosamples
Download