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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
100
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
309
Transcription
183
DNA binding
133
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
93
February, 2021
66
May, 2022
60
February, 2023
60
October, 2019
47
September, 2023
42
August, 2017
31
March, 2020
29
October, 2018
25
February, 2020
23
May, 2020
22
May, 2019
19
April, 2020
16
July, 2019
15
April, 2019
12
December, 2017
12
November, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
October, 2017
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
195
bam
159
tsv
157
txt
96
fastq
70
bed narrowPeak
52
tagAlign
27
bigWig
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bedpe
Organism
779
Homo sapiens
Biosample type
782
tissue
513
primary cell
191
cell line
83
in vitro differentiated cells
6
stem cell
Organ
134
kidney
121
heart
105
pancreas
95
liver
92
bone element
51
eye
43
brain
34
adipose tissue
34
connective tissue
28
blood vessel
28
vasculature
24
limb
20
lung
19
musculature of body
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
687
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1316
hg19
Lab
548
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
assembly!
GRCh38
month_released!
February, 2018
January, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
782 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
1
islet of Langerhans
11
32
46
7
4
3
1
1
4
liver
42
1
20
20
1
1
1
3
bone element
84
heart left ventricle
6
18
1
1
1
2
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