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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
173
single cell RNA-seq
100
total RNA-seq
87
RNA microarray
68
ATAC-seq
28
snATAC-seq
20
pCHi-C
14
Hi-C
10
RRBS
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
273
Transcription
196
DNA binding
100
DNA accessibility
17
DNA methylation
14
3D chromatin structure
Target of assay
112
control
85
histone
85
histone modification
49
broad histone mark
36
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
92
February, 2021
91
August, 2017
October, 2019
60
February, 2023
47
September, 2023
29
March, 2020
29
October, 2018
26
May, 2022
25
November, 2017
24
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
15
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
157
tsv
157
txt
127
bam
76
fastq
73
bed narrowPeak
62
tagAlign
31
bigWig
22
bed broadPeak
9
hic
8
bed bedMethyl
8
bedpe bed3+
8
bigBed bedMethyl
5
bed bed3
5
bigBed narrowPeak
5
csv
1
bed bed3+
1
bedpe
Organism
711
Homo sapiens
Biosample type
714
tissue
537
primary cell
124
in vitro differentiated cells
55
cell line
7
stem cell
Organ
132
kidney
liver
121
heart
116
pancreas
92
bone element
65
adipose tissue
65
connective tissue
54
brain
40
musculature of body
32
eye
23
blood vessel
23
vasculature
20
lung
15
epithelium
9
limb
9
spleen
8
skeleton
6
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
619
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1327
hg19
Lab
520
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
October, 2019
organ_slims!
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
714 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
5
64
49
6
1
1
1
islet of Langerhans
25
18
33
7
3
1
1
4
bone element
84
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
1
2
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