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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
12
total RNA-seq
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
37
DNA binding
12
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
19
histone
19
histone modification
18
control
10
narrow histone mark
9
broad histone mark
Date released
25
November, 2017
12
February, 2020
9
October, 2017
October, 2019
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
29
tagAlign
18
bam
14
tsv
3
fastq
2
bed narrowPeak
2
bigWig
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
54
tissue
7
primary cell
Organ
132
kidney
123
liver
121
heart
116
pancreas
92
bone element
65
adipose tissue
65
connective tissue
54
brain
40
musculature of body
32
eye
23
blood vessel
23
vasculature
20
lung
15
epithelium
9
limb
9
spleen
8
skeleton
6
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
GRCh38
65
hg19
Lab
54
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
October, 2019
organ_slims!
ovary
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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