Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
173
single cell RNA-seq
114
total RNA-seq
86
RNA microarray
82
ATAC-seq
27
snATAC-seq
24
pCHi-C
15
Hi-C
10
RRBS
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
287
Transcription
243
DNA binding
113
DNA accessibility
17
DNA methylation
15
3D chromatin structure
Target of assay
138
control
106
histone
106
histone modification
57
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
164
August, 2021
92
February, 2021
90
August, 2017
81
October, 2019
60
February, 2023
47
September, 2023
29
March, 2020
29
October, 2018
26
May, 2022
25
November, 2017
24
February, 2020
23
May, 2019
18
April, 2020
16
April, 2019
15
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
157
tsv
157
txt
153
bam
75
fastq
73
bed narrowPeak
70
tagAlign
32
bigWig
22
bed broadPeak
10
hic
9
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
bigBed narrowPeak
5
bed bed3
5
csv
1
bed bed3+
1
bedpe
Organism
792
Homo sapiens
Biosample type
792
tissue
549
primary cell
128
in vitro differentiated cells
61
cell line
5
stem cell
Organ
134
kidney
liver
122
heart
118
pancreas
92
bone element
66
connective tissue
65
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
19
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
698
AMP
47
KPMP
29
T1D
18
LungMap
Genome assembly (visualization)
GRCh38
1478
hg19
Lab
599
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
18
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
792 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
46
32
46
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
1
2
+ See 80 more…
See all biosamples
Download