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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
22
total RNA-seq
20
ATAC-seq
4
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
84
DNA binding
23
Transcription
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
56
control
28
histone
28
histone modification
16
narrow histone mark
12
broad histone mark
Date released
40
May, 2022
35
August, 2017
31
May, 2020
12
December, 2017
11
October, 2019
2
February, 2020
2
March, 2020
1
February, 2021
1
July, 2019
Available data
61
bam
51
tagAlign
28
bed narrowPeak
28
bigWig
21
fastq
3
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
135
Homo sapiens
Biosample type
135
tissue
133
cell line
3
primary cell
1
in vitro differentiated cells
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
299
hg19
GRCh38
Lab
95
AMP-T2D consortium
40
Karen Mohlke, UNC
assembly!
GRCh38
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
70
20
20
3
1
1
1
1
tibial nerve
11
1
right lobe of liver
3
1
1
1
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