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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 317ChIP-seq
  • 174single cell RNA-seq
  • 135total RNA-seq
  • 102ATAC-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 25pCHi-C
  • 16Hi-C
  • 11RRBS
  • 11WGBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1DNase-seq
Assay category
  • 317DNA binding
  • 309Transcription
  • 135DNA accessibility
  • 22DNA methylation
  • 163D chromatin structure
Target of assay
  • 184control
  • 134histone
  • 134histone modification
  • 73narrow histone mark
  • 61broad histone mark
  • 2nucleotide modification
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 165August, 2021
  • 126August, 2017
  • 93February, 2021
  • 81October, 2019
  • 66May, 2022
  • 60February, 2023
  • 47September, 2023
  • 31March, 2020
  • 31May, 2020
  • 29October, 2018
  • 25February, 2020
  • 25November, 2017
  • 23May, 2019
  • 19April, 2020
  • 16April, 2019
  • 16July, 2019
  • 12December, 2017
  • 9October, 2017
  • 8January, 2021
  • 4December, 2018
  • 4July, 2018
  • 4November, 2018
  • 4November, 2020
  • 4September, 2017
  • 3December, 2019
  • 3March, 2019
  • 3May, 2023
  • 2January, 2018
  • 2May, 2021
  • 1August, 2022
  • 1January, 2019
  • 1November, 2019
Available data
  • 204bam
  • 159tsv
  • 157txt
  • 122tagAlign
  • 101bed narrowPeak
  • 97fastq
  • 60bigWig
  • 22bed broadPeak
  • 11hic
  • 10bedpe bed3+
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 6bigBed narrowPeak
  • 6csv
  • 5bed bed3
  • 1bed bed3+
  • 1bedpe
Organism
  • 915Homo sapiens
Biosample type
  • 918tissue
  • 552primary cell
  • 198cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 134kidney
  • 123liver
  • 122heart
  • 119pancreas
  • 92bone element
  • 67connective tissue
  • 66adipose tissue
  • 62brain
  • 53eye
  • 40musculature of body
  • 28blood vessel
  • 28vasculature
  • 26limb
  • 20lung
  • 15epithelium
  • 12nerve
  • 11artery
  • 9spleen
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 823AMP
  • 47KPMP
  • 29T1D
  • 19LungMap
Genome assembly (visualization)
  • GRCh38
  • 1755hg19
Lab
  • 684AMP-T2D consortium
  • 67Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 87inconsistent ontology term
  • 9audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

918 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans463246743114
kidney764496111
liver70120201113
bone element84
subcutaneous abdominal adipose tissue363
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