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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
14
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
28
DNA accessibility
14
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
August, 2017
18
February, 2023
8
January, 2021
6
March, 2020
4
July, 2018
4
November, 2020
3
October, 2019
2
August, 2021
2
July, 2019
2
March, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
Available data
bam
39
fastq
19
bed narrowPeak
6
txt
4
tsv
3
bedpe bed3+
3
bigWig
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe
1
bigBed narrowPeak
Organism
53
Homo sapiens
Biosample type
53
tissue
Organ
223
pancreas
epithelium
135
kidney
107
heart
93
bone element
82
liver
54
eye
41
brain
36
connective tissue
20
lung
16
vasculature
15
blood vessel
13
musculature of body
9
blood
9
bodily fluid
8
adipose tissue
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
28
T1D
25
AMP
Genome assembly (visualization)
11
hg19
GRCh38
Lab
27
Kyle Gaulton, UCSD
18
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
bam
month_released!
August, 2017
organ_slims!
epithelium
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
tissue
islet of Langerhans
17
12
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
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