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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 263single cell RNA-seq
  • 251ChIP-seq
  • 244total RNA-seq
  • 233ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 32Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 511Transcription
  • 320DNA accessibility
  • 251DNA binding
  • 79DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Target of assay
  • 195histone
  • 195histone modification
  • 103broad histone mark
  • 92narrow histone mark
  • 37control
  • 24transcription factor
  • 6RNA binding protein
  • 5nucleotide modification
Date released
  • 206August, 2021
  • 176May, 2022
  • 170February, 2023
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 61October, 2019
  • 58May, 2020
  • 56September, 2020
  • 48March, 2020
  • 47September, 2023
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 7October, 2017
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 4October, 2022
  • 3May, 2023
  • 2March, 2019
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1363Homo sapiens
Biosample type
  • 714tissue
  • 468primary cell
  • 103in vitro differentiated cells
  • 79cell line
  • 7stem cell
Organ
  • 243pancreas
  • 197epithelium
  • 135kidney
  • 110liver
  • 107heart
  • 93bone element
  • 90connective tissue
  • 54eye
  • 48adipose tissue
  • 41brain
  • 39musculature of body
  • 20lung
  • 16vasculature
  • 15blood vessel
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 4artery
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 929AMP
  • 314HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 215hg19
  • GRCh38
  • 5hg18
Lab
  • 686AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 139Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 37Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 141inconsistent ontology term
  • 42audit script error
Audit category:
  • 1missing controlled_by
assembly!
  • GRCh38
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1371 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
kidney6449611
islet of Langerhans41262774314
bone element84
liver12320203111
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell8548
pancreatic alpha cell4222311
pancreatic beta cell1113161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell37561
adipocyte14181
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
HepG2199222
EndoC_BH118162321
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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