Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
66
total RNA-seq
47
WGBS
10
MeRIP-seq
10
snATAC-seq
5
Hi-C
Assay category
80
DNA accessibility
66
Transcription
47
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
55
February, 2023
16
September, 2020
10
November, 2020
8
January, 2021
6
February, 2021
3
March, 2019
3
October, 2022
2
August, 2021
1
May, 2021
Available data
84
fastq
80
zippedFastqFolder
25
bam
18
bed narrowPeak
7
tsv
6
txt
4
bedpe bed3+
4
hic
3
cool
1
bed broadPeak
1
bedpe
Organism
208
Homo sapiens
Biosample type
142
primary cell
60
tissue
6
cell line
Organ
208
pancreas
148
epithelium
116
kidney
71
liver
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
0
artery
Project
142
HPAP
40
AMP
26
T1D
Genome assembly (visualization)
25
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
3
audit script error
assembly!
GRCh38
files.file_type!
bed bed3
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
208 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
31
12
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
Download