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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
2
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
6
3D chromatin structure
3
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
24
August, 2017
4
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
40
Homo sapiens
Biosample type
38
tissue
2
primary cell
Organ
309
pancreas
258
liver
224
epithelium
145
kidney
125
heart
117
connective tissue
93
bone element
67
adipose tissue
67
brain
54
eye
44
vasculature
blood vessel
40
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
70
hg19
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed bedMethyl
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
2
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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