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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
17
pCHi-C
9
total RNA-seq
5
ATAC-seq
1
DNAme array
1
Hi-C
Assay category
48
DNA binding
9
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
control
12
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
195
August, 2021
141
February, 2021
126
August, 2017
126
May, 2020
100
February, 2023
95
October, 2019
91
November, 2017
82
May, 2022
76
May, 2021
47
September, 2023
45
March, 2020
40
September, 2020
29
October, 2018
25
February, 2020
22
May, 2019
19
April, 2020
19
July, 2019
16
January, 2021
15
April, 2019
14
December, 2017
9
October, 2017
8
February, 2018
8
January, 2018
8
November, 2018
6
June, 2019
5
December, 2018
4
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2020
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
November, 2019
1
October, 2022
1
September, 2018
Available data
40
bigWig
bed narrowPeak
5
fastq
4
bam
2
bed bed3+
Organism
81
Homo sapiens
Biosample type
47
in vitro differentiated cells
27
primary cell
6
tissue
1
cell line
Organ
18
pancreas
epithelium
4
spleen
1
bone element
1
bone marrow
1
connective tissue
1
liver
1
thymus
Project
64
AMP
17
T1D
Genome assembly (visualization)
177
hg19
GRCh38
Lab
70
Kyle Gaulton, UCSD
11
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
DNAme array
Hi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
primary cell
CD8-positive, alpha-beta T cell
3
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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tissue
spleen
4
pancreas
1
thymus
1
cell line
HepG2
1
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