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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
ChIP-seq
73
total RNA-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
3
pCHi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
106
DNA accessibility
73
DNA binding
73
Transcription
49
DNA methylation
8
3D chromatin structure
Target of assay
59
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
36
August, 2017
18
May, 2021
16
September, 2020
14
October, 2019
11
October, 2018
10
March, 2020
10
November, 2020
8
January, 2021
6
February, 2021
4
August, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
January, 2019
1
May, 2019
Available data
122
fastq
80
zippedFastqFolder
76
bam
26
bed narrowPeak
13
tsv
12
bigWig
11
tagAlign
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
323
Homo sapiens
Biosample type
154
primary cell
133
tissue
37
cell line
1
in vitro differentiated cells
Organ
311
pancreas
246
liver
228
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
142
HPAP
28
T1D
Genome assembly (visualization)
666
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
117
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
assembly!
GRCh38
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
6
42
31
1
pancreatic beta cell
13
6
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
29
18
7
4
3
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
spleen
8
1
endocrine pancreas
2
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cell line
EndoC_BH1
18
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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