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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
30
total RNA-seq
5
pCHi-C
4
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
119
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
35
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
4
March, 2020
2
February, 2021
2
July, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
14
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
168
Homo sapiens
Biosample type
97
tissue
68
cell line
2
primary cell
1
in vitro differentiated cells
Organ
299
pancreas
221
epithelium
166
liver
148
kidney
heart
110
connective tissue
93
bone element
64
adipose tissue
61
brain
55
eye
38
vasculature
37
blood vessel
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
8
hg19
GRCh38
Lab
131
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bigWig
organ_slims!
heart
BIOSAMPLE
ASSAY
168 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
WGBS
Hi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
1
1
right lobe of liver
3
1
1
1
sigmoid colon
1
small intestine
1
cell line
HepG2
52
9
2
2
2
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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