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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
ChIP-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
9
Transcription
5
3D chromatin structure
5
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
7
October, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
Available data
10
tsv
7
bam
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
22
Homo sapiens
Biosample type
12
tissue
10
primary cell
Organ
260
pancreas
200
epithelium
152
liver
132
kidney
107
heart
93
bone element
84
connective tissue
54
eye
43
adipose tissue
41
brain
37
musculature of body
23
vasculature
22
blood vessel
20
lung
9
blood
9
bodily fluid
9
limb
8
skeleton
8
vein
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
GRCh38
158
hg19
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
csv
month_released!
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
22 results
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single cell RNA-seq
ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
4
1
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
5
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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