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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
12
total RNA-seq
8
snATAC-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
42
DNA binding
12
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
23
control
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
Date released
25
November, 2017
12
February, 2020
9
October, 2019
8
January, 2021
6
July, 2019
6
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
1
January, 2018
Available data
36
tagAlign
34
bam
14
tsv
fastq
9
bigWig
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
73
Homo sapiens
Biosample type
60
tissue
12
primary cell
1
cell line
Organ
197
pancreas
154
epithelium
149
kidney
138
liver
127
heart
93
bone element
92
connective tissue
63
brain
55
eye
46
adipose tissue
43
vasculature
42
blood vessel
41
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
65
AMP
8
T1D
Genome assembly (visualization)
GRCh38
148
hg19
Lab
65
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
cell line
GM12878
1
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