Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
14
total RNA-seq
9
Hi-C
5
RRBS
3
ATAC-seq
3
pCHi-C
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA binding
15
Transcription
9
3D chromatin structure
5
DNA accessibility
5
DNA methylation
Target of assay
38
histone
38
histone modification
29
control
20
broad histone mark
18
narrow histone mark
Date released
25
November, 2017
24
August, 2017
14
February, 2020
11
July, 2019
8
October, 2019
6
October, 2017
5
March, 2020
5
May, 2019
2
June, 2019
2
May, 2022
1
February, 2023
1
January, 2018
Available data
51
tagAlign
32
bam
23
bigWig
17
tsv
16
bed narrowPeak
14
bed broadPeak
fastq
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bed3+
3
hdf5
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bed3
1
txt
Organism
104
Homo sapiens
Biosample type
97
tissue
7
primary cell
Organ
197
pancreas
154
epithelium
149
kidney
138
liver
127
heart
93
bone element
92
connective tissue
63
brain
55
eye
46
adipose tissue
43
vasculature
42
blood vessel
41
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
GRCh38
218
hg19
Lab
104
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
files.file_type!
fastq
organ_slims!
pericardium
BIOSAMPLE
ASSAY
104 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
2
1
1
1
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
gastrocnemius medialis
1
4
+ See 25 more…
primary cell
skeletal muscle cell
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
+ See 1 more…
See all biosamples
Download