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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 400ChIP-seq
  • 278ATAC-seq
  • 227single cell RNA-seq
  • 152total RNA-seq
  • 87RNA microarray
  • 57snATAC-seq
  • 56pCHi-C
  • 50WGBS
  • 31Hi-C
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 4DNase-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 400DNA binding
  • 383Transcription
  • 342DNA accessibility
  • 68DNA methylation
  • 313D chromatin structure
  • 1DNA sequencing
Target of assay
  • 209histone
  • 209histone modification
  • 172control
  • 107broad histone mark
  • 102narrow histone mark
  • 24transcription factor
  • 7RNA binding protein
  • 5nucleotide modification
Date released
  • 214August, 2021
  • 176May, 2022
  • 134May, 2020
  • 124August, 2017
  • 123May, 2021
  • 107October, 2019
  • 102February, 2021
  • 94February, 2023
  • 48March, 2020
  • 47September, 2023
  • 29July, 2019
  • 25February, 2020
  • 25November, 2017
  • 24May, 2019
  • 19April, 2020
  • 18September, 2020
  • 16April, 2019
  • 16January, 2021
  • 10November, 2020
  • 8June, 2019
  • 6October, 2017
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4October, 2022
  • 3January, 2018
  • 3May, 2023
  • 2March, 2019
  • 2October, 2018
  • 1August, 2022
Available data
  • 433bam
  • fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1389Homo sapiens
Biosample type
  • 821tissue
  • 372primary cell
  • 106in vitro differentiated cells
  • 92cell line
  • 6stem cell
Organ
  • 197pancreas
  • 154epithelium
  • 149kidney
  • 138liver
  • 127heart
  • 93bone element
  • 92connective tissue
  • 63brain
  • 55eye
  • 46adipose tissue
  • 43vasculature
  • 42blood vessel
  • 41musculature of body
  • 26limb
  • 20lung
  • 13artery
  • 12nerve
  • 10vein
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1114AMP
  • 155HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 2205hg19
  • GRCh38
Lab
  • 871AMP-T2D consortium
  • 155Klaus Kaestner, Upenn
  • 139Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 37Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 155inconsistent ontology term
  • 15audit script error
assembly!
  • GRCh38
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1397 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
STARR-seq
Capture-C
DNase-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
kidney764496111
islet of Langerhans41272674314
liver5420120121
bone element84
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell5121
pancreatic alpha cell22251
CD8-positive, alpha-beta T cell33221
pancreatic beta cell13161
naive thymus-derived CD4-positive, alpha-beta T cell22211
in vitro differentiated cells
embryonic stem cell37651
adipocyte14811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
cell line
EndoC_BH1218162321
HepG2189212
Panc17
EndoC-BH1
HEK293T2
stem cell
SB Ad3.11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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