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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
single cell RNA-seq
49
total RNA-seq
13
ChIP-seq
6
snATAC-seq
4
RRBS
2
DNase-seq
2
STARR-seq
1
FAIRE-seq
Assay category
108
Transcription
13
DNA binding
9
DNA accessibility
4
DNA methylation
Target of assay
12
control
1
RNA binding protein
1
transcription factor
Date released
65
August, 2021
47
September, 2023
8
October, 2019
5
April, 2019
5
July, 2019
3
May, 2023
1
December, 2019
1
June, 2019
1
May, 2019
Available data
62
txt
14
bam
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
hic
Organism
136
Homo sapiens
Biosample type
123
tissue
8
primary cell
5
cell line
Organ
293
pancreas
246
liver
214
epithelium
136
kidney
114
connective tissue
93
bone element
64
adipose tissue
55
brain
50
eye
38
musculature of body
32
vasculature
30
blood vessel
26
heart
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
9
artery
8
embryo
8
skeleton
8
spleen
8
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
89
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
116
hg19
Lab
66
Katalin Susztak, Upenn
47
KPMP
21
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
assembly!
GRCh38
files.file_type!
hic
tsv
BIOSAMPLE
ASSAY
136 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
DNase-seq
STARR-seq
FAIRE-seq
tissue
kidney
59
49
7
6
1
1
primary cell
epithelial cell of proximal tubule
2
1
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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