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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
22
DNA binding
14
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
18
control
4
histone
4
histone modification
4
narrow histone mark
Date released
38
October, 2019
27
February, 2023
5
July, 2019
2
May, 2019
1
June, 2019
Available data
28
bed narrowPeak
19
bam
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
Organism
73
Homo sapiens
Biosample type
71
tissue
2
primary cell
Organ
300
pancreas
248
liver
220
epithelium
137
kidney
114
connective tissue
93
bone element
64
adipose tissue
55
brain
50
eye
40
musculature of body
35
vasculature
33
blood vessel
29
heart
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
10
vein
9
artery
8
embryo
8
skeleton
8
spleen
4
gonad
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
73
AMP
Genome assembly (visualization)
126
hg19
GRCh38
Lab
73
AMP-T2D consortium
assembly!
GRCh38
files.file_type!
tsv
organ_slims!
ovary
BIOSAMPLE
ASSAY
73 results
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ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
tissue
islet of Langerhans
1
3
14
4
retina
15
pigmented layer of retina
12
tibial nerve
11
tibial artery
5
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primary cell
retinal pigment epithelial cell
1
1
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