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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
16
ATAC-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
27
DNA binding
17
DNA accessibility
14
Transcription
4
3D chromatin structure
Target of assay
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
200
May, 2022
170
February, 2023
136
August, 2021
136
February, 2021
114
August, 2017
114
May, 2021
111
May, 2020
66
October, 2019
56
September, 2020
55
November, 2017
46
March, 2020
25
February, 2020
24
July, 2019
19
April, 2020
16
January, 2021
8
January, 2018
6
October, 2017
5
November, 2020
4
July, 2018
4
March, 2023
4
October, 2022
3
March, 2019
3
November, 2018
2
December, 2019
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
May, 2019
1
September, 2018
Available data
7
bam
6
bigWig
4
bigBed narrowPeak
4
hic
3
bedpe bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed narrowPeak
1
tar
Organism
66
Homo sapiens
Biosample type
54
tissue
7
primary cell
4
in vitro differentiated cells
1
cell line
Organ
21
eye
9
epithelium
7
blood vessel
7
vasculature
7
vein
4
connective tissue
4
gonad
4
ovary
4
pancreas
kidney
1
adipose tissue
1
brain
1
heart
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
66
AMP
Genome assembly (visualization)
195
hg19
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
files.file_type!
xls
organ_slims!
kidney
target.investigated_as!
control
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
13
14
4
adipose tissue
1
heart
1
primary cell
endothelial cell of umbilical vein
5
1
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
Panc1
1
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