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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
17
ChIP-seq
4
pCHi-C
3
Hi-C
2
RRBS
2
WGBS
2
total RNA-seq
Assay category
95
Transcription
17
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
March, 2020
4
July, 2019
4
May, 2019
2
February, 2020
2
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
16
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bed narrowPeak
1
bigWig
Organism
123
Homo sapiens
Biosample type
120
tissue
3
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
GRCh38
116
hg19
Lab
123
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
files.file_type!
xls
organ_slims!
artery
BIOSAMPLE
ASSAY
123 results
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single cell RNA-seq
ChIP-seq
pCHi-C
Hi-C
RRBS
WGBS
total RNA-seq
tissue
heart left ventricle
18
7
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
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